Publications

2008-2009

Coming soon

Publications over the last five years (2002-2007)

2007

Dasika VK, White JA, Colburn HS "Simple models show the general advantages of dendrites in coincidence detection", J Neurophysiol 97(5):3449-3459 (2007)
Dumortier F., Popovic N., Kaper T.J. "The critical wave speed for the FKPP equation with cutoff", Nonlinearity 20 :855-877 (2007)
Dumortier F., Popovic N., Kaper, T.J. "The asymptotic critical wave speed in a family of scalar reaction-diffusion equations", Journal of Mathematical Analysis and Applications 326(2):1007-1023 (2007)
Krigman, S. and Wayne, C.E., "Boundary controllability of Maxwell's equations with nonzero conductivity inside a cube, I: Spectral controllability ", Journal of Mathematical Analysis and Applications 329(2):1375-1396 (2007)

2006

Beck M.A., Doelman A., Kaper T.J., "A geometric analysis of traveling waves in a bioremediation model", Journal of Nonlinear Science 16(4):329-349 (2006)
Beck M.A., Doelman, A., Kaper T.J. "Stability of traveling waves in a bioremediation model,", (2006), preprint
Cunningham, M.O., D. Pervouchine, C. Racca, N. Kopell, C.H. Davies, R.S. G. Jones, R.D. Traub and M.A. Whittington, "Neuronal metabolism governs cortical network response rate", Proc. Nat. Acad. Sci. 103:5597-601 (2006)
Dorval AD and White JA "Synaptic input statistics tune the variability and reproducibility of neuronal responses", Chaos 16(026105):1-16 (2006)
Driscoll, M.E., Gardner T.S. "Identification and control of gene networks in living organisms via supervised and unsupervised learning", Journal of Process Control 16:303-311 (2006)
Faith, J.J., B. Hayete, J.T. Thaden, I. Mogno, J. Wierzbowski, G. Cottarel, S. Kasif, J.J. Collins, and T.S. Gardner. "Shotgun mapping of Escherichia coli transcriptional regulation from a compendium of expression profiles", (2006), preprint
Gear C.W., Kevrekidis I.G., Kaper T.J., Zagaris A. "Analysis of the accuracy and convergence of equation-free projection to a slow manifold", (2006), preprint
Guido NJ , Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR, Elston TC and Collins, JJ "A bottom-up approach to gene regulation", Nature 439:856-860 (2006)
Haas JS, Dorval AD, and White JA "Contributions of Ih to feature selectivity in layer II stellate cells of the entorhinal cortex", Journal of Computational Neuroscience in press 22(2):161-171 (2006)
Kloetzer, M. and C. Belta, "A fully automated framework for control of linear systems from LTL specifications", Lecture Notes in Computer Science 3927:333-347 (2006)
Kloetzer, M. and C. Belta, "Reachability analysis of multi-affine systems", Lecture Notes in Computer Science, 3927:348-362 (2006)
Kuznetsov, A., C. Wilson and N. Kopell "Transient high frequency firing in a coupled_oscillator model of the mesencephalic dopaminergic neuron", J Neurophysiol. 95(2):932-47 (2006)
Nahum LA, Reynolds MT, Wang ZO, Faith JJ, Jonna R, Jiang ZO, Meyer TJ, Pollock DD. "EGenBio: A Data Management System for Evolutionary Genomics and Biodiversity.", submitted (2006), preprint
Narayan R, Grana G & Sen K "Dual Time-Scales in Cortical Discrimination of Complex Sounds", Journal of Neurophysiology in press (2006), preprint
Patel, H. B. and Gardner, T. S. "Genomic Normalization for Affymetrix E. coli Microarrays.", Nucleic Acids Research. In preparation. (2006), preprint
Patel, H. B. and Gardner, T. S., "Transcriptional Profile of the Stringent Response in E. coli. ", Journal of Bacteriology. (2006), preprint
Pervouchine DD, TI Netoff, HG Rotstein, JA White, MO Cunningham, MA Whittington, and N Kopell "Low-Dimensional Maps Encoding Dynamics in Entorhinal Cortex and Hippocampus", Neural Computation 18 (11 ):2617-2650 (2006)
Popovic N, Kaper T.J. "Rigorous asymptotic expansions for critical wave speeds in a family of reaction-diffusion equations", Journal of Dynamics and Differential Equations 18:1003-139 (2006)
Rotstein H., Oppermann T., White J. and Kopell N., "A reduced model for medial entorhinal cortex stellate cell: subthreshold oscillations, spiking and synchronization", submitted (2006), preprint
Rotstein H.G., Oppermann T., White J.A., and Kopell N. "The dynamic structure underlying subthreshold oscillatory activity and the onset of spikes in a model of medial entorhinal cortex stellate cells ", J Comp. Neurosci. 21(3):271-292 (2006)
Shamir, M., "The scaling of 'Winner takes all' accuracy with the population size.", Neural Computation (2006), preprint
Shamir, M., & H. Sompolinsky "Implications of Neuronal Diversity on Population Coding.", Neural Computation (2006), preprint
Soto G, Kopell N, Sen K "Network Architecture, Receptive Fields and Neuromodulation: Computational and Functional Implications of Cholinergic Modulation in Primary Auditory Cortex", (2006), preprint
Volfson D., Marciniak J., Blake WJ, Ostroff N., Tsimring LS, Hasty J., "Origins of extrinsic variability in eukaryotic gene expression.", Nature 439(7078):861-4 (2006)

2005

Blake WJ, and Collins JJ. "And the noise played on: stochastic gene expression and HIV-1", Cell 122:147-149 (2005)
C. Borgers and N. Kopell "Effects of noisy drive on rhythms in networks of excitatory and inhibitory neurons", Neural Computation 17(3):557-608 (2005)
Christoph B�rgers and Steven Epstein and Nancy J. Kopell "Background gamma rhythmicity and attention in cortical local circuits: A computational study ", PNAS 102(19):7002-7007 (2005)
Clewley R., Rotstein H.G., Kopell N., "A computational tool for the reduction of nonlinear ODE systems possessing multiple scales", Multiscale Modeling and Simulation (2005), preprint
Dasika V., White J.A., Carney L.H., and Colburn H.S., "Effects of inhibitory feedback in a network model of avian brainstem", Journal of Neurophysiology 94:400-414 (2005)
Davis M.J., Zagaris A., Kaper T.J., "Reductions in elementary PDEs, parts I and II", Journal of Chemical Physics (2005), preprint
Deville L. "Reduced equations for models of laminated materials in thin domains, II", Asymptotic Analysis 42:311-346 (2005)
Deville L., Wayne C.E. "Reduced equations for models of laminated materials in thin domains, I", Asymptotic Analysis 42:263--309 (2005)
Dorval A.D. and White JA "Channel noise is essential for perithreshold oscillations in entorhinal stellate neurons", Journal of Neuroscience 25:10025-10028 (2005)
Driscoll M.E., Gardner T.S., "Identification and Control of Gene Networks in Living Organisms via Supervised and Unsupervised Learning", Journal of Process Control (2005), preprint
Gardner T.S., Faith, J.J., "Reverse-engineering transcription control networks", Physics of Life Reviews 2:65-88 (2005)
Gear C.W., Kaper T.J., Kevrekidis I., Zagaris A., "Projecting to a slow manifold: Part 2. The validity of the zero-derivative principle", SIAM Journal on Applied Dynamical Systems 4:711--731 (2005)
Gloveli T., Dugladze T., Rotstein H., Traub R., Heinemann U., Monyer H., Whittington M. and Kopell N., "Orthogonal arrangement of rhythm generating microcircuits in the hippocampus", PNAS 102:13295-300 (2005)
Gorchetchnikov, A. and Hasselmo, M.E. "A biophysical implementation of a bidirectional graph search algorithm to solve multiple goal navigation tasks.", Connection Science, 17:145-164 (2005)
Gorchetchnikov, A., Versace, M. and Hasselmo, M.E. "A model of STDP based on spatially and temporally local information: Derivation and combination with gated decay.", Neural Networks 18(5-6):458-66 (2005)
HG Rotstein, DD Pervouchine, CD Acker, MJ Gillies, JA White, EH Buhl, MA Whittington, and N Kopell "Slow and fast inhibition and an h-current interact to create a theta rhythm in a model of CA1 interneuron network ", J Neurophysiol 94:1509-1518 (2005)
Harry J.D., Niemi J.B., Priplata A.A. and Collins J.J., "Balancing act", IEEE Spectrum 1:36-41 (2005)
Hasselmo, M. and Zilli, E., "Hebbian synaptic modification in cortical circuits and memory-guided behavior in ", Proceedings of International Joint Conference on Neural Networks 0:0 (2005)
Hayete, B., J. Bienkowska. "GOTrees: Predicting GO Associations from Protein Domain Composition Using Decision Trees", Pacific Symposium on Biocomputing 10:127-138 (2005)
Hyman, J.M., Zilli, E.A., Paley, A.M., Hasselmo, M.E. "Medial prefrontal cortex cells show dynamic modulation with the hippocampal theta rhythm dependent on behavior", Soc. Neurosci. Abstr. 31:0 (2005)
Isaacs F.J., Blake W.J., and Collins J.J., "Signal processing in single cells", Science 307:1886-1888 (2005)
Isaacs F.J., and Collins J.J., "Plug-and-play with RNA", Nature Biotechnology 23:306-307 (2005)
Jones, S.R. and N. Kopell "Local network parameters can affect inter-network phase lags", J. Math. Biol. 52:115-140 (2005)
Kaern M, Elston TC, Blake WJ and Collins JJ. "Stochasticity in gene expression: from theories to phenotypes", Nature Reveiws Genetics 6:451-464 (2005)
Koene, R. A. and Hasselmo, M.E., "An integrate and fire model of prefrontal cortex provides a biological implementation of action selection in reinforcement learning theory that reuses known ...", Proc. IJCNN 0:0 (2005)
Koene, R.A. and Hasselmo, M.E., "An integrate and fire model of prefrontal cortex neuronal activity during performance of goal-directed decision making", Cerebral Cortex 15(12):1964-81 (2005)
Kuznetsov A., Wilson C. and Kopell N., "High frequency transitional processes in a model of the dopamine neuron", revised and submitted J. Neurophysiol. (2005), preprint
Lecomte, C., McDaniel, J.G., and Barbone, P.E., "Error bounds for dynamic condensation methods", (2005), preprint
Leiderman, R., Barbone P.E. and Braga, A.M.B., "Scattering of ultrasonic waves by defective adhesion interfaces in submerged laminated plates", J. Acoust. Soc. Am. (2005), preprint
McGaughy, J., Koene, R. A., Eichenbaum, H. & Hasselmo, M. E. "Cholinergic deafferentation of the entorhinal cortex in rats impairs encoding of novel but not familiar stimuli in a delayed non-match to sample task (DNMS).", J. Neurosci. 25(44):10273-81 (2005)
Merriam, E.B., Netoff, T.I., Banks, M.I., "Bistable network behavior of layer I interneurons in auditory cortex", Journal of Neuroscience 25(26 ):6175-6186 (2005)
N. Kopell "Does it Have to be This Complicated? Focus on Single-Column Thalamocortical Network Model Exhibiting Gamma Oscillations, Spindles, and Epileptogenic Bursts", J Neurophysiol 93:1829-1830 (2005)
Nancy Kopell "Biased Random Walk: A Brief Mathematical Biography", in Complexities: Women in Mathematics 1:349-354 (2005)
Narayan R., Ergun A., Sen K., "Discrimination of Natural Sounds and Cortical Receptive Field Structure.", J. Neurophys. 94:2970-2975 (2005)
Netoff T.I., Acker CD, Bettencourt JC, White J.A., "Beyond two-cell networks: experimental measurement of neuronal responses to multiple synaptic inputs", J Comput Neurosci. 18(3):287-95 (2005)
O. Jensen and P. Goel and N. Kopell and M. Pohja and R. Hari and B. Ermentrout "On the human sensorimotor-cortex beta rhythm: sources and modeling", Neuroimage 26(2):347-55 (2005)
Pinto D., Jackson R. and Wayne C.E., "Existence and stability of traveling pulses in a continuous neuronal network", SIAM Journal on Applied Dynamical Systems 4:954-984 (2005)
Popovic N., and Kaper T.J., "Rigorous asymptotic expansions for critical wave speeds in a family of scalar reaction-diffusion equations", Journal of Dynamics and Differential Equations (2005), preprint
Raina SZ, Faith JJ, Seligmann H, Disotell T, Stewart C-B, and Pollock DD. "Evolution of base substitution gradients in primate mitochondrial genomes.", Genome Research. 0:0 (2005)
Rotstein H.G., Gillies M.J., Acker C.D., White J.A., Buhl E.H., Whittington M.A., and Kopell N., "Slow and fast inhibition and an h-current interact to create a theta rhythm in a model CA1 interneuron network", Journal of Neurophysiology 94:1508-1517 (2005)
S.R Jones and N. Kopell "Local network parameters can affect inter-network phase lags in central pattern generators", J. Math. Biol. (2005), preprint
Schon, K., Atri, A., Hasselmo, M.E., Tricarico, M.D., LoPresti, M.L., Stern, C.E. "Scopolamine reduces persistent activity related to long-term encoding in the parahippocampal gyrus during delayed matching in humans.", J. Neurosci. 40:9112-23 (2005)
Sivan E. and Kopell N., "Slow patterning in the olfactory system of the locust antennal lobe", J. Comput. Neurosci. (2005), preprint
Steve Kunec and Michael E. Hasselmo and Nancy Kopell "Encoding and Retrieval in the CA3 Region of the Hippocampus: A Model of Theta-Phase Separation ", J Neurophysiol 94:70-82 (2005)
Theoden I. Netoff, Matthew I. Banks, Alan D. Dorval, Corey D. Acker, Julie S. Haas, Nancy Kopell, and John A. White "Synchronization in Hybrid Neuronal Networks of the Hippocampal Formation", J Neurophysiol. 93(3):1197-208 (2005)
Thompson M.J., Driscoll M.E., Gardner T.S., Collins J. J., "Reverse engineering gene regulatory networks.", Wiley Encyclopedia of Genetics (2005), preprint
Zagaris A., Kaper H., Kaper T.J., "Two perspectives on reduction in ordinary differential equations", Mathematische Nachrichten 278:1629-1642 (2005)
Zagaris A., Kaper H.G., Kaper T.J., "Two perspectives on reduction of ordinary differential equations", Mathematische Nachrichten (2005), preprint
Zhou Y.-D., Acker C.D., Netoff T.I., Sen K, and White JA "Increasing calcium transients by broadening postsynaptic action potentials enhances timing-dependent synaptic depression.", Proceedings of the National Academy of Sciences 102:19121-19125 (2005)
di Bernardo D., Thompson M.J ., Gardner T.S., Chobot S.E., Eastwood E.L., Wojtovich A.P., Elliot S.J., Schaus S.E. and Collins J.J., "Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks", Nature Biotechnology 23:377-383 (2005)

2004

A. Atri, S.J. Sherman, K.A. Norman, B.A. Kirchhoff, M.M. Nicolas, M.D. Greicius, S.C. Cramer, H.C. Breiter, M.E. Hasselmo, C.E. Stern, "Blockade of central cholinergic receptors impairs new learning and increases proactive interference in a word paired-associate memory task", Behavioral Neurosci 118(1):223-36 (2004)
A. Harkin, T.J. Kaper, A. Nadim, "On the nonlinear bi-directional transfer of energy between the volume and shape modes of a gas bubble in liquid", Physics of Fluids (2004), preprint
A. Zagaris, H.G. Kaper, T.J. Kaper, "Analysis of the Computational Singular Perturbation Method for Chemical Kinetics", Journal of Nonlinear Science 14(1):59-91 (2004)
A. Zagaris, H.G. Kaper, T.J. Kaper, "Fast and slow dynamics for the computational singular perturbation method", SIAM Multiscale Modeling and Simulation (2004), preprint
B.D. Aguda and H.M. Sauro "Computer Simulation of MAPK Signal Transduction", Methods in Molecular Biology : MAP Kinase Signaling Protocols 250:167-175 (2004)
C.W. Gear, T.J. Kaper, I. Kevrekidis, A. Zagaris, "Projecting to a slow manifold: singularly perturbed systems and legacy codes", SIAM Journal on Applied Dynamical Systems (2004), preprint
D.S. Morgan, T.J. Kaper, "Axisymmetric ring solutions and their destabilization into spots in the 2-D Gray-Scott model", Physica D 192:1-2 (2004)
DD Pervouchine "IRIS: Intermolecular RNA Interaction Search", Genome Informatics 15(2):92-101 (2004)
DD Pervouchine, "Hierarchy of closures of matrix pencils", Journal of Lie theory 14(2):443-479 (2004)
DeVille L., Harkin A., Josic K., Kaper T.J., "Applications of asymptotic normal form theory and its connection with the renormalization group method of Chen-Goldenfeld-Oono", SIAM Journal on Applied Dynamical Systems (2004), preprint
E. Paul, P.E. Barbone, N.H. Gokhale, "Elastic modulus imaging: on the uniqueness and nonuniqueness of the elastography inverse problem in two dimensions", Inverse Problems 20(1):283-296 (2004)
F.J. Isaacs, D.J. Dwyer, C. Ding, D.D. Pervouchine, C.R. Cantor, J.J. Collins "Engineered riboregulators enable post-transcriptional control of gene expression", Nature Biotechnology 22:841-847 (2004)
H. Kobayashi, M. Kaern, M. Araki, K. Chung, T.S. Gardner, C.R. Cantor, and J.J. Collins, "Programmable cells: interfacing engineered and natural gene networks", Proceedings of the National Academy of Sciences USA (2004), preprint
J. Jalics, "Slow Waves in Mutually Inhibitory Neuronal Networks", Physica D 192:95-122 (2004)
Kuznetsov A., Kearn M. and Kopell N., "Synchrony in a population of hysteresis-based genetic oscillators", SIAM J. Appl Math 65:392-42 (2004)
Mason J., Linsay P.S., Collins J.J. and Glass L., "Evolving complex dynamics in electronic models of genetic networks", CHAOS 14:707-715 (2004)
Mecham B.H., Klus G.T., Strovel J., Augustus M., Byrne D., Bozso P., Wetmore D.Z., Mariani T.J., Kohane I.S., Szallasi Z., "Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements", Nucleic Acids Res. 32(9):e74 (2004)
N. Gokhale, M. Richards, A. Oberai, P. Barbone, and M. Doyley, "Simultaneous Elastic Image Registration and Elastic Modulus Reconstruction", Proceedings ISBI 2004:543-546 (2004)
Nancy Kopell and Bard Ermentrout "Chemical and electrical synapses perform complementary roles in the synchronization of interneuronal networks ", PNAS 101:15482-15487 101:15482-15487 (2004)
Netoff, T.I., Clewley, R., Arno, S., Keck, T., White, J.A., "Epileptiform behavior in small world networks", J Neurosci. (2004), preprint
Sivan E. and Kopell N., "From The Cover: Mechanism and circuitry for clustering and fine discrimination of odors in insects", Proc Natl Acad Sci 101:17861-6 (2004)
T. Netoff, R. Clewley, S. Arno, T. Keck, J. White, "Epilepsy in small world networks", Journal of Neuroscience (2004), preprint

2003

Attila A Priplata, James B Niemi, Jason D Harry, Lewis A Lipsitz, James J Collins "Vibrating insoles and balance control in elderly people", The Lancet 362:1123-1124 (2003)
B.D. Aguda, and C.K. Algar "Structural analysis of the qualitative networks regulating the cell cycle and apoptosis", Cell Cycle 2:538-544 (2003)
Blake W.J., Kaern M., Cantor C.R., Collins J.J. "Noise in eukaryotic gene expression", Nature 422:633-637 (2003)
C. Lecomte, J.G. McDaniel, P.E. Barbone, and A.D. Pierce, "Efficient high-order frequency interpolation of structural dynamic response", AIAA Journal 41(11):2208-2215 (2003)
C.A. Laughton, M. Slavin, K. Katdare, L. Nolan, J.F. Bean, D.C. Kerrigan, E. Phillips, L.A. Lipsitz, and J.J. Collins, "Aging, muscle activity and balance control: physiologic changes associated with balance impairment", Gait and Posture 18:101-108 (2003)
Christoph Borgers, Nancy Kopell "Synchronization in networks of excitatory and inhibitory neurons with sparse, random connectivity", Neural Computation 15:509-538 (2003)
Collins J.J., Priplata A.A., Gravelle D.C., Niemi J., Harry J., Lipsitz L.A. "Noise-enhanced human sensorimotor function", IEEE Engineering in Medicine and Biology Magazine 22(2):76-83 (2003)
Corey D. Acker, Nancy Kopell, John A. White "Synchronization of Strongly Coupled Excitatory Neurons: Relating Network Behavior to Biophysics", J. Comp. Neurosci. 15(1):71-90 (2003)
D. Pinto, S. Jones, T. Kaper and N. Kopell "Analysis of state-dependent transitions in frequency and long-distance coordination in a model oscillatory cortical circuit", J. Comp. Neurosci. 15(2):283-298 (2003)
D.D. Pervouchine, J.H. Graber, and S. Kasif, "On the normalization of RNA equilibrium free energy to the length of the sequence", Nuc. Ac. Res. 31(9):e49 (2003)
David McMillen, Nancy Kopell "Noise-Stabilized Long-Distance Synchronization in Populations of Model Neurons", J. Comp. Neurosci. 15(2):143-157 (2003)
E. Ben-Naim, P.L. Krapivsky, F. Vazquez, and S. Redner "Unity and Discord in Opinion Dynamics", Physica A 330:99 (2003)
E.T. Hsiao-Wecksler, K. Katdare, J. Matson, W. Liu, L.A. Lipsitz, and JJ Collins, "Predicting the dynamic postural control response from quiet-stance behavior in elderly adults", Journal of Biomechanics 36:1327-1333 (2003)
F. Vazquez, P.L. Krapivsky, and S. Redner "Constrained Opinion Dynamics: Freezing and Slow Evolution", J. Phys A36:L61 (2003)
Farren J. Isaacs, Jeff Hasty, Charles R. Cantor, J. J. Collins "Prediction and measurement of an autoregulatory genetic module", Proceedings of the National Academy of Sciences USA 100:7714-7719 (2003)
G.S. Medvedev, C.J. Wilson, J.C. Callaway, Nancy Kopell "Dendritic synchrony and transient dynamics in a coupled oscillator model of dopaminergic neuron", J. Comput. Neurosci 15(1):53-69 (2003)
H.G. Rotstein, N. Kopell, A.M. Zhabotinsky, I.R. Epstein, "A canard mechanism for localization in systems of globally coupled oscillators", SIAM J. Appl. Math. 63:1998-2019 (2003)
H.G. Rotstein, N. Kopell, A.M. Zhabotinsky, I.R. Epstein, "Canard phenomenon and localization of oscillations in the Belousov-Zhabotinsky reaction with global feedback", J. Chem. Phys. 119(17):8824-8832 (2003)
Leonid L. Rubchinsky, Nancy Kopell, Karen A. Sigvardt "Modeling facilitation and inhibition of competing motor programs in basal ganglia subthalamic nucleus�pallidal circuits", Proc. of Nat Acad. Sci. USA 100(24):14427-14432 (2003)
M. Kaern, W.J. Blake, and J.J. Collins, "The engineering of gene regulatory networks", Annual Reviews of Biomedical Engineering 5:179-206 (2003)
Mark O. Cunningham, Ceri H. Davies, Eberhard H. Buhl, Nancy Kopell and Miles A. Whittington "Gamma oscillations induced by kainate receptor activation in the entorhinal cortex in vitro''", J. Neurosci. 23(30):9761-9769 (2003)
Mette S. Olufsen, Miles A. Whittington, Marcelo Camperi, Nancy Kopell "New Roles for the Gamma Rhythm: Population Tuning and Preprocessing", J. Comput. Neurosci 14:35-54 (2003)
N. Bursac, M. Papadaki, J.A. White, RS Eisenberg, G. Vunjak-Novakovic, and L.E. Freed, "Cultivation in rotating bioreactors promotes maintenance of cardiac myocyte electrophysiology and molecular properties", Tissue Engineering 9:1243-1253 (2003)
N. O. Stitziel, J. Tseng, D. Pervouchine, D. Goddeau, S. Kasif, J. Liang, "Structural Location of Disease-Associated Single Nucleotide Polymorphisms", J. Mol. Biol. 327:1021-1030 (2003)
N.S. Sung, J. Gordon, G. Rose, E. Getzoff, S. Kron, J. Onuchic, N. Scherer, DW Sumners and N. Kopell "Educating a new breed of scientists", Science 301:1485 (2003)
Nancy Kopell "A Tree of Fireflies, a Flock of boson Clouds: the review of "Sync. The Emerging Science of Spontaneous Order" by St. Strogatz", Science 300:1878-1879 (2003)
Nancy Kopell, Committee on Undergraduate Biology Education to Prepare Research Scientists for the 21st Century "BIO 2010: Transforming Undergraduate Education for Future Research Scientists", National Research Council, the National Academies Press, Washington DC (2003), preprint
R.A. Koene, A. Gorchetchnikov, R.C. Cannon, and M.E. Hasselmo, "Modeling goal-directed spatial navigation in the rat based on physiological data from the hippocampal formation", Neural Networks 16(5-6):577-84 (2003)
Stephanie R. Jones, Brian Mulloney, Tasso J. Kaper, and Nancy Kopell "Coordination of Cellular Pattern-Generating Circuits that Control Limb Movements: The Sources of Stable Differences in Intersegmental Phases", J. Neurosci. 23:3457-3468 (2003)
Tegner J., Yeung MKS, Hasty J., Collins J.J. "Reverse engineering gene networks - integrating genetic perturbations with dynamical modeling", Proceedings of the National Academy of Sciences USA 100:5944-5949 (2003)
Timothy S. Gardner, Diego di Bernardo, David Lorenz, James J. Collins "Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling", Science 301:102-105 (2003)
V. Mendez, H.G. Rotstein, S. Fedotov, "Speed of reaction-diffusion fronts in spatially heterogeneous media", Phys. Rev. E. 68:68 (2003)
V. Rottschafer, T.J. Kaper, "Geometric theory for multi-bump, self-similar, blowup solutions of the cubic nonlinear Schrodinger equation", Nonlinearity 16:929-961 (2003)

2002

Dhruv N.T., Niemi J.B., Harry J.D., Lipsitz L.A., Collins J.J. "Enhancing tactile sensation in older adults with electrical noise stimulation", Neuroreport 13:597-600 (2002)
Gravelle D.C., Laughton C.A., Dhruv N.T., Katdare K.D., Niemi J.B., Lipsitz L.A., Collins J.J. "Noise-enhanced balance control in older adults", Neuroreport 13:1853-1856 (2002)
Hasty J., Collins J.J. "Translating the noise", Nature Genetics 31:13-14 (2002)
Hasty J., Dolnik M., Rottschafer V., Collins J.J. "A synthetic gene network for entraining and amplifying cellular oscillations", Physical Review Letters 88:148101 (2002)
Hasty J., McMillen D., Collins J.J. "Engineered gene circuits", Nature 420:224-230 (2002)
Liu W., Lipsitz L.A., Montero-Odasso M., Bean J., Kerrigan D.C., Collins J.J. "Noise-enhanced vibrotactile sensitivity in older adults and patients with stroke and patients with diabetic neuropathy", Archives of Physical Medicine and Rehabilitation 83:171-176 (2002)
McMillen D., Kopell N., Hasty J., Collins J.J. "Synchronizing genetic relaxation oscillators with intercell signaling", Proceedings of the National Academy of Sciences USA 99:679-684 (2002)
N. Kopell and G.B. Ermentrout "Mechanisms of phase-locking and frequency control in pairs of coupled neural oscillators", Handbook on Dynamical Systems: Toward applications. Ed. B. Fiedler, Elsevier 2:3-54 (2002)
O. Jensen, M. Pohja, P. Goel, G.B. Ermentrout, N. Kopell, R. Hari "On the physiological basis of the 15-30 Hz motor-cortex rhythm", Proc. of 13th Int. Conf. On Biomagnetism (2002), preprint
Priplata A., Niemi J., Salen M., Harry J., Lipsitz L.A., Collins J.J. "Noise-enhanced human balance control", Physical Review Letters 89:238101 (2002)
R.C. Cannon, M.E. Hasselmo, and R.A. Koene, "From biophysics to behavior: Catacomb2 and the design of biologically plausible models for spatial navigation", Neuroinformatics 1(1):3-42 (2002)
Yeung M.K.S., Tegner J., Collins J.J. "Reverse engineering gene networks using singular value decomposition and robust regression", Proceedings of the National Academy of Sciences USA 99:6163-6168 (2002)